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HDF5: H5D - Hierarchical Data Format

https://docs.hdfgroup.org/hdf5/v1_12/group___h5_d.html

H5Dopen2() opens the existing dataset specified by a location identifier and name, loc_id and name, respectively. loc_id may specify a file, group, dataset, named datatype, or attribute. If an …


Caffe HDF5 Output Layer error - looking for working …

https://stackoverflow.com/questions/38753530/caffe-hdf5-output-layer-error-looking-for-working-example

All - I'm having some trouble getting HDF5 output files to work in Caffe. Has anyone successfully used the HDF5 output file layer in Caffe? If so could you provide an …


Reading HDF5 input

https://groups.google.com/g/caffe-users/c/qCU71Lv65ak

I am having some trouble loading HDF5 data into my caffe model. I have a text file which has the full path for the data file (hdf5) and label file (hdf5) in seperate lines. ... H5D.c …


HDF5 issue · Issue #75 · jts/nanopolish · GitHub

https://github.com/jts/nanopolish/issues/75

#000: H5D.c line 358 in H5Dopen2(): not found major: Dataset minor: Object not found #1: H5Gloc.c line 430 in H5G_loc_find(): can't find object major: Symbol table minor: …


hdf5 unit test failures · GitHub - Gist

https://gist.github.com/rwcarlsen/3c35df49b8db6a7de0b5

#000: H5A.c line 247 in H5Acreate2(): not a location: major: Invalid arguments to routine: minor: Inappropriate type ... #000: H5D.c line 358 in H5Dopen2(): not found: major: Dataset: minor: …


Error using HDF5 data for training models in caffe

https://stackoverflow.com/questions/28608114/error-using-hdf5-data-for-training-models-in-caffe

Stack Overflow Public questions & answers; Stack Overflow for Teams Where developers & technologists share private knowledge with coworkers; Talent Build your …


HDF5 error · Issue #14 · geodynamics/vq · GitHub

https://github.com/geodynamics/vq/issues/14

#000: H5D.c line 316 in H5Dopen2(): not a location major: Invalid arguments to routine minor: Inappropriate type #1: H5Gloc.c line 253 in H5G_loc(): invalid object ID major: …


Error when selecting and writing an element dataset hdf5 …

https://forum.hdfgroup.org/t/error-when-selecting-and-writing-an-element-dataset-hdf5-1-10-4-solved/9330

I solved the problem. Apparently, I have to define also a memory data space and pass the relative arguments to the h5dwrite_f interface. It is not clear to me why these optional …


problem with restarting a job - User Support - OpenMC

https://openmc.discourse.group/t/problem-with-restarting-a-job/189

#000: H5D.c line 358 in H5Dopen2(): not found major: Dataset minor: Object not found #001: H5Gloc.c line 430 in H5G_loc_find(): can’t find object major: Symbol table minor: …


HDF5-DIAG: Error detected in HDF5 (1.10.4) thread ... - GitHub

https://github.com/jts/nanopolish/issues/620

#000: H5D.c line 292 in H5Dopen2(): unable to open dataset ... H5Dint.c line 1205 in H5D__open_name(): not found major: Dataset minor: Object not found #2: H5Gloc.c line 422 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #3: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed


Convert ACE ENDF format - User Support - OpenMC

https://openmc.discourse.group/t/convert-ace-endf-format/2144

#000: H5D.c line 285 in H5Dopen2(): unable to open dataset major: Dataset minor: Can’t open object #001: H5VLcallback.c line 1910 in H5VL_dataset_open(): dataset open failed …


Error using HDF5 data for training · Issue #1906 · BVLC/caffe

https://github.com/BVLC/caffe/issues/1906

Hello There, I have been trying to train the caffenet model using HDF5 data I used the prototxt files from ~/../caffe/examples/hdf5_classification. But I get the ...


Hec Ras - HDF5-DIAG: Error detected in HDF5 - Autodesk Community

https://forums.autodesk.com/t5/civil-3d-forum/river-and-flood-hec-ras-hdf5-diag-error-detected-in-hdf5/td-p/9574602

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Matlab h5read get errors - MATLAB Answers - MATLAB Central

https://www.mathworks.com/matlabcentral/answers/158986-matlab-h5read-get-errors

Matlab h5read get errors . Learn more about h5read, matlab 2013b, function errors, hdf5


unit/regression test failures on osx 10.9.3 with hdf5 1.8.13

https://groups.google.com/g/cyclus-dev/c/7zZHaY7BaxE

#000: H5A.c line 244 in H5Acreate2(): not a location major: Invalid arguments to routine minor: Inappropriate type #001: H5Gloc.c line 253 in H5G_loc(): invalid object ID major: …


Error about HDF5 · Issue #10 · norouzi/mih · GitHub

https://github.com/norouzi/mih/issues/10

The text was updated successfully, but these errors were encountered:


HDF5-DIAG: Error detected in HDF5 (1.10.4) thread 0:

https://forum.hdfgroup.org/t/hdf5-diag-error-detected-in-hdf5-1-10-4-thread-0/5473

Hi Greetings, I am trying to execute code using H5Dread function,mem id used is H5T_Compound type at runtime I am getting following error, #000: c:\\autotest\\hdf5110 …


Question #216582 : Questions : DOLFIN - Launchpad

https://answers.launchpad.net/dolfin/+question/216582

All other unit tests seem to pass. The test in question creates a Vector(305), is that a proper test in parallell? Is there something wrong with my setup? Errors like these occur on …


OpenMC not finding multipole library - User Support - OpenMC

https://openmc.discourse.group/t/openmc-not-finding-multipole-library/509

The library file also exists at the specified location and as far as I can tell should be fine. Any idea what I’m missing? IIn case it helps, I am running on a CentOS 7.6.1810, with …


HDF5 I/O crashing - FEniCS Q&A

https://fenicsproject.org/qa/2619/hdf5-i-o-crashing/

The following code compiles fine but crashes when run. First, I run it without commenting the "OUTPUT" so as to generate the h5 output file; this works fine but it crashes when I try to read …


hdf5 file read problem. - MATLAB Answers - MATLAB Central

https://uk.mathworks.com/matlabcentral/answers/244907-hdf5-file-read-problem

A sample file has been attached. I had to change the extension to png so I can upload it. After download you can change it back to hdf5 but it doesn't really matter for Matlab.


[Bug] HDF5-DIAG: Error detected in HDF5 (1.10.5) #1427 - GitHub

https://github.com/GEOSX/GEOSX/issues/1427

Machine: Ubuntu. Compiler: gcc (Ubuntu 9.3.0-17ubuntu1~20.04) 9.3.0. GEOSX Version:0.2.0. Move the input file to one of the Lustre filesystems, such as /p/lscratchh/XXX/. …


HDF5-DIAG: Error detected in HDF5 - HDF5 - HDF Forum

https://forum.hdfgroup.org/t/hdf5-diag-error-detected-in-hdf5/9517

I solved the issue by adding --hdf5 …/HDF5. In this way, the system points to the right file which has a different version. Thanks, Lovepreet


Handle Possible HDF5 Reading Errors #32 - GitHub

https://github.com/IANW-Projects/toolkitICL/issues/32

The text was updated successfully, but these errors were encountered:


loading chunks or even the whole hdf5 file into memory

https://forum.hdfgroup.org/t/loading-chunks-or-even-the-whole-hdf5-file-into-memory/1637

#000: H5D.c line 321 in H5Dopen2(): not found major: Dataset minor: Object not found #001: H5Gloc.c line 468 in H5G_loc_find(): can't find object major: Symbol table minor: …


HDF5: Datasets (H5D) - Hierarchical Data Format

https://docs.hdfgroup.org/hdf5/develop/group___h5_d.html

Returns Returns a dataset identifier if successful; otherwise returns H5I_INVALID_HID.. H5Dcreate2() creates a new dataset named name at the location specified by loc_id, and …


Loading data from HDF5 to vector in C++ - Stack Overflow

https://stackoverflow.com/questions/25568446/loading-data-from-hdf5-to-vector-in-c

Connect and share knowledge within a single location that is structured and easy to search. Learn more about Teams Loading data from HDF5 to vector in C++ ... read(): unable to set up type info major: Dataset minor: Unable to initialize object #002: ../../../src/H5Dio.c line 939 in H5D__typeinfo_init(): unable to convert between src and dest ...


Simulation end after 20% / Bug Reports / User Forum of Software …

https://forum.basement.ethz.ch/viewtopic.php?id=5295

Hi Francesco. According to the console output, the simulation crashed because it could not write a simulation result to the results.h5 file. There can be different reasons for this, …


Sample does not have a positive sample median when running

https://gatk.broadinstitute.org/hc/en-us/community/posts/360073249712-Sample-does-not-have-a-positive-sample-median-when-running-DenoiseReadCounts-

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping.Its powerful processing engine …


error writing empty character string in rhdf5 >= 2.8.0 - Bioconductor

https://support.bioconductor.org/p/60065/

It was a bug due to the automatic determination of chunk size introduced in rhdf5 2.8.0. I fixed the bug. It is again possible to write 0-length objects with h5write using rhdf 2.9.2 (available after …


hdf5 errors in unit tests · GitHub

https://gist.github.com/mbmcgarry/c572b0e6b4c0e3617af7

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Save Function does not work - MATLAB Answers - MATLAB …

https://www.mathworks.com/matlabcentral/answers/474135-save-function-does-not-work

# 005: H5Dchunk.c line 2739 in H5D__chunk_cache_prune(): unable to preempt one or more raw data cache entry. major: Low-level I/O. ... Based on your location, we recommend that you select: . You can also select a web site from the …


hdf5 error for Anthony · GitHub

https://gist.github.com/mbmcgarry/1bcad0e34974bbad8b09

Instantly share code, notes, and snippets. mbmcgarry / error_for_anthony. Created Jan 9, 2015


XDMF write_checkpoint leads to segfault in paraview

https://bitbucket.org/fenics-project/dolfin/issues/1039/xdmf-write_checkpoint-leads-to-segfault-in

To reproduce, ``` #!python import dolfin from dolfin import * mesh = UnitSquareMesh(10,10) DG1 = FunctionSpace(mesh,'DG', 1) class Step(UserExpression): def __init__ ...


Error importing molecule_info.h5 file generated by Cell Ranger …

https://support.bioconductor.org/p/119686/

Hello! I am going though the vignette for DropletUtils and I am having an issue importing the the molecule info.h5 file and I was wondering if it was because it was generated from a newer …


Chapter 9: HDF5 Error Handling - Lawrence Berkeley National …

http://davis.lbl.gov/Manuals/HDF5-1.8.7/UG/13_ErrorHandling.html

9.1. Introduction. The HDF5 Library provides an error reporting mechanism for both the library itself and for user application programs. It can trace errors through ...


[Solved]-hdf5 example code h5_rdwt.c does not work-eclipse

https://www.appsloveworld.com/eclipse/100/115/hdf5-example-code-h5-rdwt-c-does-not-work

Coding example for the question hdf5 example code h5_rdwt.c does not work-eclipse. ... (1.8.11) thread 0: #000: ../../src/H5D.c line 334 in H5Dopen2(): not found major: Dataset minor: Object …


A number of small problems - HDFView / Java HDF Object …

https://forum.hdfgroup.org/t/a-number-of-small-problems/4150

1) "long double" / f16 float types are not viewable with HDFView 3.0. The data type is shown as "Unknown" with all values displayed as "*unknown*". It would be nice if it could …


Re: [Xolotl-psi-development] Xolotl Installation | Xolotl Plasma ...

https://sourceforge.net/p/xolotl-psi/mailman/message/32925891/

If you are not interested in the performance monitoring, you can edit the generated params.txt file to set "perfHandler=dummy". Here is another wiki page that might be useful in the future about …


unit/regression test failures on osx 10.9.3 with hdf5 1.8.13

https://groups.google.com/g/cyclus-dev/c/7zZHaY7BaxE/m/ioxnB8f7b-YJ

unit/regression test failures on osx 10.9.3 with hdf5 1.8.13 ... Groups


IllustrisTNG - cannot read dataset

https://www.tng-project.org/dev707/data/forum/topic/430/cannot-read-dataset/

There are no groups or subhalos in that file, as indicated by the header fields, so you shouldn't try to read such a dataset. (If you re-implement the read routines in C++ you will have to handle such details, and can refer to the python groupcat.py as a reference).


cymetricError.test · GitHub

https://gist.github.com/FlanFlanagan/111146f7cae01d1a49af5bf9cc22498d

GitHub Gist: instantly share code, notes, and snippets.


HDF5/H5D API Specification - Hierarchical Data Format

https://docs.hdfgroup.org/archive/support/HDF5/doc/RM/RM_H5D.html

Name: H5Dcreate2 Signature: hid_t H5Dcreate2( hid_t loc_id, const char *name, hid_t dtype_id, hid_t space_id, hid_t lcpl_id, hid_t dcpl_id, hid_t dapl_id). Purpose: Creates a new dataset and links it into the file. Description: H5Dcreate2 creates a new dataset named name at the location specified by loc_id, and associates constant and initial persistent properties with …


Thread: Re: [Xolotl-psi-development] Xolotl Installation

https://sourceforge.net/p/xolotl-psi/mailman/xolotl-psi-development/thread/543BBE16.1020501%40ornl.gov/

Hi Agraj, You can open a ticket on https://sourceforge.net/p/xolotl-psi/tickets/.With the screenshot you sent it is hard for me to read what the error is. Also, it ...


Python 在caffe中为训练模型使用HDF5数据时出 …

https://duoduokou.com/python/40841180682947904544.html

Python 在caffe中为训练模型使用HDF5数据时出错 python deep-learning 但是我得到了以下错误 I0219 19:06:43.038563 5773 caffe.cpp:103] Use CPU.

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